The Vice-Chancellor, appointed by the Secretary General of the OIC, is the Chief Executive in charge of the overall administration of the University and responsible for realizing the objectives of the University by executing the policies and directives of higher authorities like General Assembly, Conference of Foreign Ministers, Heads of States and Governments and as per provisions of the Statute, Rules and Regulations of OIC and IUT.

The internal organizational set-up of the University consists of the Office of the Vice-Chancellor, Departments, Centers, Registrar's Office, Finance and Accounts Office, Cabinet and Personnel Office, Library and Documentation Office and the General Services and Engineering Office.

The Vice-Chancellor also heads the Administrative Advisory Committee comprising the Heads of all the Departments and Offices which meets regularly to review the overall functioning and advise the Vice-Chancellor to facilitate day to day administration of the University.

The University is financed primarily by mandatory contributions of the Member States of OIC to its annual budget, income from services rendered by the University and voluntary donations.

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